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Gi Dissertationspreis 2011

Johannes Textor
Researcher
Tumor Immunology,
Radboud University Medical Center,
Nijmegen, The Netherlands

contact | research | publications | software | dissertation | awards

Contact Information

RIMLS
278 Tumor Immunology
Geert Grooteplein 26-28
6525 GA Nijmegen
The Netherlands

mail: johannes.textor }at{ gmx.de

Research

I am looking for a PhD student! See the position announcement.

I develop and apply computational models and statistical methods for biomedical research. My two main fields of interest are Computational Immunology, that is, applying tools and methods of math and computer science to immunological questions, and Artificial Immune Systems, i.e., applying immunological principles and paradigms to problems in computer science and engineering. Moreover, I work on algorithmic and methodological aspects of Causality Theory, focusing in particular on applications in Epidemiology.

Publications

Show: complete list | selected publications

Author order is highlighted where it is meaningful (e.g. it is not meaningful in theoretical computer science, but it is in computational biology). If two or more authors are highlighted, this means they contributed equally.

Preprints

  • Benito van der Zander, Maciej Liskiewicz, Johannes Textor:
    Separators and Adjustment Sets in Ancestral Graphs: Complete Criteria and an Algorithmic Framework.
    arXiv cs.AI, 2017.
  • Johannes Textor, Anke Fähnrich, Martin Meinhardt, Cornelia Tune, Sebastian Klein, René Pagel, Peter König, Kathrin Kalies, Jürgen Westermann:
    Deep Sequencing Reveals Transient Segregation of T Cell Repertoires in Splenic T Cell Zones During an Immune Response.
    bioRxiv, 2017.
  • Emilija Perković, Johannes Textor, Markus Kalisch, Marloes H. Maathuis:
    Complete graphical characterization and construction of adjustment sets in Markov equivalence classes of ancestral graphs.
    arXiv math.ST, revised 2017.

2018

  • Felix Thoemmes, Yves Rosseel, Johannes Textor:
    Local Fit Evaluation of Structural Equation Models Using Graphical Criteria.
    Psychological Methods 23(1):27-41, 2018.
    Postprint | R code
  • Kellyn F Arnold, George TH Ellison, Sarah C Gadd, Johannes Textor, Peter WG Tennant, Allison Heppenstall, Mark S Gilthorpe:
    Adjustment for time-invariant and time-varying confounders in 'unexplained residuals' models for longitudinal data within a causal framework and associated challenges.
    Statistical Methods in Medical Research , 2018.
  • Mark A. J. Gorris, Altuna Halilovic, Katrin Rabold, Anne van Duffelen, Iresha N. Wickramasinghe, Dagmar Verweij, Inge M. N. Wortel, Johannes Textor, I. Jolanda M. de Vries, Carl G. Figdor:
    Eight-Color Multiplex Immunohistochemistry for Simultaneous Detection of Multiple Immune Checkpoint Molecules within the Tumor Microenvironment.
    Journal of Immunology 200(1):347-354, 2018.

2017

  • Frans Bianchi, Johannes Textor, Geert van den Bogaart:
    Transmembrane helices are an overlooked source of MHC class I epitopes.
    Frontiers in Immunology 8:1118, 2017.
  • Till S. M. Mathan, Johannes Textor, Annette E. Sköld, Inge Beeren, Tom van Ooorschot, Mareke Brüning, Carl G. Figdor, Sonja I. Buschow, Ghaith Bakdash, I. Jolanda de Vries:
    Harnessing RNA sequencing for global, unbiased evaluation of two new adjuvants for dendritic-cell immunotherapy.
    Oncotarget 8:19879-19893, 2017.

2016

  • Johannes Textor, Benito van der Zander, Mark K. Gilthorpe, Maciej Liskiewicz, George T.H. Ellison:
    Robust causal inference using directed acyclic graphs: the R package ‘dagitty’.
    International Journal of Epidemiology 45(6):1887-1894, 2016.
    PDF postprint | Supporting Information
  • Johannes Textor, Judith N. Mandl, and Rob J. de Boer:
    The Reticular Cell Network: A Robust Backbone for Immune Responses.
    PLoS Biology 14(10): e2000827, 2016.
  • Steve Boudewijns, Kalijn F. Bol, Gerty Schreibelt, Harm Westdorp, Johannes Textor, Michelle M. van Rossum, Nicole M. Scharenborg, Annemiek J. de Boer, Mandy W.M.M. van de Rakt, Jeanne M. Pots, Tom G.M. van Oorschot, Tjitske Duiveman-de Boer, Michel A. Olde Nordkamp, Wilmy S.E.C. van Meeteren, Winette T.A. van der Graaf, Johannes J. Bonenkamp, Johannes H.W. de Wilt, Erik H.J.G. Aarntzen, Cornelis J.A. Punt, Winald R. Gerritsen, Carl G. Figdor, I. Jolanda M. de Vries:
    Adjuvant dendritic cell vaccination induces tumor-specific immune responses in the majority of stage III melanoma patients.
    OncoImmunology e1191732, 2016.
  • Angela Vasaturo, Altuna Halilovic, Kalijn F. Bol, Dagmar I. Verweij, Willeke A.M. Blokx, Cornelis J.A. Punt, Patricia J.T.A. Groenen, Han J.H.J.M. van Krieken, Johannes Textor, I. Jolanda M. de Vries, Carl G. Figdor:
    T cell landscape in a primary melanoma predicts the survival of patients with metastatic disease after their treatment with dendritic cell vaccines.
    Cancer Research 76(12):3496-506, 2016.

2015

  • Ioana Niculescu, Johannes Textor, Rob J. de Boer:
    Crawling and Gliding: A Computational Model for Shape-Driven Cell Migration.
    PLoS Computational Biology 11(10):e1004280, 2015.
  • Xiangyu Rao, Ilka Hoof I, Debbie Van Baarle, Can Keşmir, Johannes Textor:
    HLA Preferences for Conserved Epitopes: A Potential Mechanism for Hepatitis C Clearance.
    Frontiers in Immunology 6:552, 2015.

    People who have the gene "HLA-B27" are more likely to clear Hepatitis C virus (HCV) infections. We show that the immune system of such people is likely to attack conserved regions of the HCV genome (marked in red), which the virus cannot easily mutate. This could explain why HLA-B27 is a beneficial gene for controlling HCV.

  • Jürgen Westermann, Tanja Lange, Johannes Textor, Jan Born:
    System Consolidation During Sleep – A Common Principle Underlying Psychological and Immunological Memory Formation.
    Trends in Neurosciences 38: 583-595, 2015.

    In this opinion article, we note some intriguing parallels between memory in the central nervous system and memory in the immune system. Based on these, we argue why sleep strengthens memory in both systems.

    Highlighted in EurekAlert!
  • Justin M. Richner, Grzegorz B. Gmyrek, Jennifer Govero, Yizheng Tu, Gerritje J. W. van der Windt, Talibah U. Metcalf, Elias K. Haddad, Johannes Textor, Mark J. Miller, Michael S. Diamond:
    Age-Dependent Cell Trafficking Defects in Draining Lymph Nodes Impair Adaptive Immunity and Control of West Nile Virus Infection.
    PLoS Pathogens 11(7): e1005027, 2015.
    Highlighted in EurekAlert!
  • Johannes Textor, Alexander Idelberger, Maciej Liskiewicz:
    Learning from Pairwise Marginal Independencies.
    In Proceedings of the 31st Conference on Uncertainty in Artificial Intelligence (UAI 2015), pp. 882-891. AUAI Press, 2015.
  • Emilija Perkovic, Johannes Textor, Markus Kalisch, Marloes Maathuis:
    A Complete Generalized Adjustment Criterion.
    In Proceedings of the 31st Conference on Uncertainty in Artificial Intelligence (UAI 2015), pp. 682-691. AUAI Press, 2015.
  • Benito van der Zander, Johannes Textor, Maciej Liskiewicz:
    Efficiently Finding Conditional Instruments for Causal Inference.
    In Proceedings of the 24th International Joint Conference on Artificial Intelligence (IJCAI 2015), pp. 3243-3249. AAAI Press, 2015.
  • Paola Masuzzo, Lennart Martens, 2014 Cell Migration Workshop Participants:
    An open data ecosystem for cell migration research.
    Trends in Cell Biology 25(2):55-8, 2015.

2014

  • Johannes Textor, Sarah E. Henrickson, Judith N. Mandl, Ulrich H. von Andrian, Jürgen Westermann, Rob J. de Boer, Joost B. Beltman:
    Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment.
    PLoS Computational Biology 10(8): e1003752, 2014.

    The immune system's T cells are constantly on the move: they migrate between different lymphoid organs approximately once per day (A), and move within these organs in a random fashion (B), changing their direction every few minutes. We model this two-scale search and show how this contributes to quick detection of invading pathogens.

    PDF preprint
  • Benito van der Zander, Maciej Liskiewicz, Johannes Textor:
    Constructing Separators and Adjustment Sets in Ancestral Graphs.
    In Proceedings of the 30th Conference on Uncertainty in Artificial Intelligence (UAI 2014), pp. 907-916. AUAI Press, 2014.
    Technical report version (including proofs)
  • Johannes Textor, Katharina Dannenberg, Maciej Liskiewicz:
    A Generic Finite Automata Based Approach to Implementing Lymphocyte Repertoire Models.
    In Proceedings of the 2014 conference on genetic and evolutionary computation (GECCO'14), pp. 129-137. ACM, 2014.
    PDF preprint
  • David Banczyk, Kathrin Kalies, Lars Nachbar, Lars Bergmann, Philipp Schmidt, Ulrike Bode, Bianca Teegen, Philipp Steven, Tanja Lange, Johannes Textor, Ralf J Ludwig, Winfried Stöcker, Peter König, Eric Bell, and Jürgen Westermann
    Activated CD4(+) T cells enter the splenic T-cell zone and induce auto-antibody-producing germinal centers through bystander activation.
    European Journal of Immunology 44 (1):92-102, 2014.

2013

2012

2011

  • Johannes Textor:
    Our Moral Ancestors: Determining Adjustment Sets in Causal Diagrams with Ease (in German).
    Gesundheitswesen, 73:897-900, 2011.
  • Johannes Textor, Juliane Hardt, Sven Knüppel:
    DAGitty: A Graphical Tool for Analyzing Causal Diagrams.
    Epidemiology, 5(22):745, 2011.
  • Rüdiger Reischuk, Johannes Textor:
    Stochastic Search With Locally Clustered Targets: Learning from T Cells.
    In 10th International Conference on Artificial Immune Systems (ICARIS 2011), Volume 6825 of Lecture Notes in Computer Science, pp. 146-159. Springer, 2011.
    PDF preprint
  • Johannes Textor, Antonio Peixoto, Sarah E. Henrickson, Mathieu Sinn, Ulrich H. von Andrian, Jürgen Westermann:
    Defining the Quantitative Limits of Intravital Two-Photon Lymphocyte Tracking.
    PNAS, 108(30):12401-12406, 2011.

    Two-photon imaging allows to track cells in living animals. But lymphocytes may spend days in lymph nodes, and two-photon imaging can only run for a few hours. We wondered how much this limits the precision with which we can describe lymphocyte motion based on such experiments. By simulating T cell motion in a realistic artificial lymph node that we reconstructed from tissue slices, we show that important behaviors can indeed escape two-photon imaging.

  • Johannes Textor, Maciej Liskiewicz:
    Adjustment Criteria in Causal Diagrams: An Algorithmic Perspective.
    In Proceedings of the 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), pp. 681-688. AUAI Press, 2011.
    PDF preprint
  • Michael Elberfeld, Johannes Textor:
    Negative Selection Algorithms on Strings with Efficient Training and Linear-Time Classification.
    Theoretical Computer Science, 412(6):534-542, 2011.
    PDF preprint

2010

2009

  • Johannes Textor, Björn Hansen:
    Hybrid Simulation Algorithms for an Agent Based Model of the Immune Response.
    Cybernetics and Systems 40(5):390-417, 2009.
    PDF preprint
  • Michael Elberfeld, Johannes Textor:
    Efficient Algorithms for String-Based Negative Selection.
    In Proceedings of the 8th International Conference on Artificial Immune Systems (ICARIS 2009), Volume 5666 of Lecture Notes in Computer Science, pp. 109-121. Springer, 2009.
    PDF preprint
  • Johannes Textor, Benjamin Feldner:
    An XML Pipeline Based System Architecture for Managing Bibliographic Metadata.
    In Metadata and Semantics Research (MTSR'09), Volume 46 of Communications in Computer and Information Science, pp. 130-140. Springer, 2009.
    Download PDF

2008

2007

PhD Dissertation

My PhD thesis was carried out at the Institute of Theoretical Computer Science, University of Luebeck, Germany, under joint supervision of Rüdiger Reischuk (Theoretical Computer Science) and Jürgen Westermann (Immunology).

Johannes Textor:
Search and Learning in the Immune System: Models of Immune Surveillance and Negative Selection.
PhD Dissertation, University of Luebeck, 2011.
Download PDF

Software

Some software I wrote for my research is available for download:

  • An experimental implementation of my work on efficient negative selection algorithms written in Java.
  • DAGitty, a tool to draw and analyze causal diagrams written in JavaScript.
  • LImmSim, an agent-based simulation of the immune system written in C++.
  • R packages for epitope prediction, cell track analysis, and causal analysis.

Awards

  • The IBM Best Student Paper Award 2014 went to the first author, Benito van der Zander, of our paper "Constructing Separators and Adjustment Sets in Ancestral Graphs" at UAI 2014.
  • Stephan Weiland Preis 2012 — young investigator's award by the German society for epidemiology for my work on causality.
  • GI Dissertationspreis 2011 — joint award by the German, Austrian and Swiss societies for computer science for the best computer science dissertation in 2011.

    Press releases (in German): GI | Uni Lübeck
  • Staatlicher Universitätspreis — award for the best STEM dissertation in 2011, University of Lübeck, Germany.
  • Best paper awards at the international conference on artificial immune systems (ICARIS) in 2012 and 2009; best student paper award at ICARIS in 2007; nominated for best paper award at GECCO 2010 (genetics based machine learning track).

Franzmann, Florian ; Klaus, Tobias ; Ulbrich, Peter ; Deinhardt, Patrick ; Steffes, Benjamin ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
From Intent to Effect: Tool-based Generation of Time-Triggered Real-Time Systems on Multi-Core Processors.
In: IEEE Computer Society (Hrsg.) : Proceedings of the 19th IEEE Symposium on Real-Time Computing (ISORC '16)
(19th IEEE Symposium on Real-Time Computing, York, UK, May 17-20, 2016).
2016, S. 0-0. - ISBN 978-1-4673-9032-3
Stichwörter: RTSC; AORTA; Multi-Core; Real-Time Systems; QRONOS
[doi>10.1109/ISORC.2016.27] (BibTeX)

Klaus, Tobias ; Franzmann, Florian ; Engelhard, Tobias ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Usable RTOS-APIs?
In: Brandenburg, Björn B. ; Kato, Shinpei (Hrsg.) : Proceedings of the 10th Annual Workshop on Operating Systems Platforms for Embedded Real-Time Applications
(10th Workshop on Operating Systems Platforms for Embedded Real-Time Applications (OSPERT '14), Madrid, 08.07.2014).
Kaiserslautern, DE : Max Planck Institute for Software Systems, 2014, S. 61-66.
Stichwörter: AORTA; RTSC (BibTeX)

Stilkerich, Isabella ; Strotz, Michael ; Erhardt, Christoph ; Hoffmann, Martin ; Lohmann, Daniel ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
A JVM for Soft-Error-Prone Embedded Systems.
In: ACM (Hrsg.) : Proceedings of the 14th ACM SIGPLAN/SIGBED International Conference on Languages, Compilers, Tools and Theory for Embedded Systems
(The 14th Conference on Languages, Compilers and Tools for Embedded Systems (LCTES 2013), Seattle, Washington, USA, June 2013).
2013, S. 21-32. - ISBN 978-1-4503-2085-6
Stichwörter: KESO; DanceOS; AORTA; Java; RTSJ; Embedded Systems; Real-Time Systems; Reliability
[doi>10.1145/2465554.2465571] (BibTeX)

Scheler, Fabian:
Atomic Basic Blocks - Eine Abstraktion für die gezielte Manipulation der Echtzeitsystemarchitektur.
In: Hölldobler, Steffen (Ed.) : Ausgezeichnete Informatikdissertationen 2011
(Kolloquium zum GI Dissertationspreis 2011, Dagstuhl, 13.05.2012 - 16.05.2012).
Bonn : Bonner Köllen Verlag, 2012, pp 18 -190. (GI-Edition: Lecture Notes in Informatics Vol. D-12) - ISBN 978-3-88579-416-5 (BibTeX)

Ulbrich, Peter ; Franzmann, Florian ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Design by Uncertainty: Towards the Use of Measurement Uncertainty in Real-Time Systems.
In: Nolte, Thomas (Ed.) : Proceedings of the 7th IEEE International Symposium on Industrial Embedded Systems
(7th Symposium on Industrial Embedded Systems (SIES '12), Karlsruhe, Germany, 20-22 June 2012).
Los Alamitos : IEEE Computer Society, 2012, pp 275-278. - ISBN 978-1-4673-2685-8
Keywords: AORTA; ARES; QRONOS
[doi>10.1109/SIES.2012.6356595] (BibTeX)

Hofer, Wanja ; Danner, Daniel ; Müller, Rainer ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang ; Lohmann, Daniel:
Sloth on Time: Efficient Hardware-Based Scheduling for Time-Triggered RTOS.
In: Lu, Chenyang ; Almeida, Luis (Ed.) : Proceedings of the 33rd IEEE Real-Time Systems Symposium (RTSS 2012)
(33rd IEEE Real-Time Systems Symposium (RTSS 2012), San Juan, Puerto Rico, December 2012).
Los Alamitos, CA, USA : IEEE Computer Society, 2012, pp 237-247. - ISBN 978-0-7695-4869-2
Keywords: Sloth; Operating Systems; Embedded Systems; Real-Time Systems; Interrupt Handling; Timers; Time-Triggered Scheduling; OSEK; AUTOSAR; Infineon TriCore
[doi>10.1109/RTSS.2012.75] (BibTeX)

Stellwag, Philippe ; Scheler, Fabian ; Krainz, Jakob ; Schröder-Preikschat, Wolfgang:
A Wait-Free NCAS Library for Parallel Applications with Timing Constraints.
In: Proceedings of Principles and Practice of Parallel Programming Conference (Ed.) : ACM SIGPLAN (Org.):
Principles and Practice of Parallel Programming 2011 (PPoPP 2011)
(16th ACM SIGPLAN Annual Symp. on Principles and Practice of Parallel Programming, San Antonio, TX).
2011, pp 301-302. - ISBN 978-1-4503-0119-0
Keywords: pCtrl; wait freedom; disjoint-access parallelism; NCAS; real-time systems (BibTeX)

Scheler, Fabian:
Atomic Basic Blocks: Eine Abstraktion für die gezielte Manipulation der Echtzeitsystemarchitektur.
Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Ph.D. thesis, 2011.
- 171 pages.
Keywords: Echtzeitsystemarchitektur; Atomic Basic Blocks; ABB; Real-Time Systems Compiler; RTSC; zeitgesteuerte Systeme; ereignisgesteuerte Systeme; Real-Time Systems Architecture; Atomic Basic Blocks; Real-Time Systems Compiler; Time-triggered; Event-triggered (BibTeX)

Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
The Real-Time Systems Compiler: migrating event-triggered systems to time-triggered systems.
In: Software: Practice and Experience 41 (2011), No. 12, pp 1491-1515
Keywords: Atomic Basic Blocks; ABB; RTSC; Real-Time Systems Compiler; Real-Time Systems; Echtzeitsysteme; Event-Triggered Systems; Time-Triggered Systems
[doi>10.1002/spe.1099] (BibTeX)

Tartler, Reinhard ; Lohmann, Daniel ; Scheler, Fabian ; Spinczyk, Olaf:
AspectC++: An integrated approach for static and dynamic adaptation of system software.
In: Knowledge-Based Systems (2010), No. 23, pp 704-720
Keywords: AOP; C++; AspectC++; Programming languages; Adaptable systems
[doi>10.1016/j.knosys.2010.03.002] (BibTeX)

Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
The RTSC: Leveraging the Migration from Event-Triggered to Time-Triggered Systems.
In: Obermaisser, Roman (Ed.) : Proceedings of the 13th IEEE International Symposium on Object/Component/Service-oriented Real-time Distributed Computing (ISORC '10)
(IEEE International Symposium on Object/Component/Service-oriented Real-time Distributed Computing, Carmona, May 2010).
Washington : IEEE Press, 2010, pp 34-41. - ISBN 978-0-7695-4037-5
Keywords: ABBs; RTSC; Real-Time Systems; Event-Triggered Systems; Time-Triggered Systems
[doi>10.1109/ISORC.2010.11] (BibTeX)

Scheler, Fabian ; Hofer, Wanja ; Oechslein, Benjamin ; Pfister, Rudi ; Schröder-Preikschat, Wolfgang ; Lohmann, Daniel:
Parallel, Hardware-Supported Interrupt Handling in an Event-Triggered Real-Time Operating System.
In: Henkel, Jörg ; Parameswaran, Sri (Org.):
Proceedings of the 2009 International Conference on Compilers, Architecture and Synthesis for Embedded Systems (CASES 2009)
(2009 International Conference on Compilers, Architecture and Synthesis for Embedded Systems (CASES 2009), Grenoble, France, October 2009).
New York, NY, USA : ACM Press, 2009, pp 167-174. - ISBN 978-1-60558-626-7
Keywords: CiAO; Real-Time Systems; Priority-Driven; Rate-Monotonic Priority Inversion; TriCore; Interrupt Handling
[doi>10.1145/1629395.1629419] (BibTeX)

Hofer, Wanja ; Lohmann, Daniel ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Sloth: Let the Hardware Do the Work!
In: ACM SIGOPS (Ed.) : Proceedings of the Work-in-Progress Session of the 22nd ACM Symposium on Operating Systems Principles (SOSP-WiP 2009)
(Work-in-Progress Session of the 22nd ACM Symposium on Operating Systems Principles (SOSP-WiP 2009), Big Sky, MT, USA, October 2009).
2009, pp 1.
Keywords: Sloth; Threads; Interrupts; OSEK (BibTeX)

Hofer, Wanja ; Lohmann, Daniel ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Sloth: Threads as Interrupts.
In: Baker, Theodore P. (Ed.) : Proceedings of the 30th IEEE Real-Time Systems Symposium (RTSS 2009)
(30th IEEE Real-Time Systems Symposium (RTSS 2009), Washington, D.C., USA, December 2009).
Los Alamitos, CA, USA : IEEE Computer Society, 2009, pp 204-213. - ISBN 978-0-7695-3875-4
Keywords: Sloth; Operating Systems; Embedded Systems; Real-Time Systems; Thread Management; Interrupt Handling; OSEK; Infineon TriCore; Priority-Driven Scheduling; CiAO; VAMOS
[doi>10.1109/RTSS.2009.18] (BibTeX)

Scheler, Fabian ; Mitzlaff, Martin ; Schröder-Preikschat, Wolfgang:
Atomic Basic Blocks.
In: Holleczek, Peter ; Vogel-Heuser, Birgit (Ed.) : Mobilität und Echtzeit
(PEARL 2007, Boppard, 06./07.12.2007).
2007, pp 59-68. (Informatik aktuell) - ISBN 978-3-540-74836-6
Keywords: ABB; RTSC (BibTeX)

Schröder-Preikschat, Wolfgang ; Lohmann, Daniel ; Scheler, Fabian ; Spinczyk, Olaf:
Dimensions of Variability in Embedded Operating Systems.
In: Informatik - Forschung und Entwicklung 22 (2007), No. 1, pp 5-22
Keywords: embedded systems, operating systems, specialization, customization, portability, non-functional properties, cross-cutting concerns
[doi>10.1007/s00450-007-0037-x] (BibTeX)

Scheler, Fabian ; Mitzlaff, Martin ; Schröder-Preikschat, Wolfgang ; Schirmeier, Horst:
Towards a Real-Time Systems Compiler.
In: Seepold, Ralf ; Martinez Madrid, Natividad ; Kucera, Markus (Ed.) : Proceedings of the Fifth International Workshop on Intelligent Solutions in Embedded Systems (WISES 07)
(Fifth International Workshop on Intelligent Solutions in Embedded Systems (WISES 07), Leganes (Madrid), 21./22.06.2007).
Leganes (Madrid) : IEEE, 2007, pp 62-75. - ISBN 978-84-89315-47-1
Keywords: ABB; RTSC (BibTeX)

Gilani, Wasif ; Scheler, Fabian ; Lohmann, Daniel ; Spinczyk, Olaf ; Schröder-Preikschat, Wolfgang:
Unification of Static and Dynamic AOP for Evolution in Embedded Software Systems.
In: Springer (Ed.) : Proceeding of 6th International Symposium on Software Composition
(6th International Symposium on Software Composition, Braga,Portugal, 03.2007).
2007.
Keywords: CiAO;FAME-DBMS;AspectC++;Dynamic Weaving;Dynamic AOP;Dynamisches Weben;Dynamische AOP (BibTeX)

Lohmann, Daniel ; Scheler, Fabian ; Tartler, Reinhard ; Spinczyk, Olaf ; Schröder-Preikschat, Wolfgang:
A Quantitative Analysis of Aspects in the eCOS Kernel.
In: European Chapter of ACM SIGOPS (Org.):
Proceedings of the EuroSys 2006 Conference
(EuroSys 2006, Leuven, Belgium, April 18-21, 2006).
Belgium : ACM Press, 2006, pp 191-204. - ISBN 1-59593-322-0
Keywords: AOP; AspectC++, CiAO, eCos (BibTeX)

Scheler, Fabian ; Lohmann, Daniel ; Spinczyk, Olaf ; Schröder-Preikschat, Wolfgang:
Aspect-Oriented Real-Time Architecture - AORTA.
In: IEEE Computer Society, Technical Committee on Real-Time Systens (Ed.) : Proceedings Work-In-Progress Session RTSS'06
(The 27th IEEE Real-Time-Systems Symposium, RTSS 2006, Rio de Janeiro, Brazil, December 5-8, 2006).
2006, pp 5-8. (BibTeX)

Lohmann, Daniel ; Scheler, Fabian ; Schröder-Preikschat, Wolfgang ; Spinczyk, Olaf:
PURE Embedded Operating Systems - CiAO.
In: IEEE (Ed.) : Proceedings of the International Workshop on Operating System Platforms for Embedded Real-Time Applications
(OSPERT 2006, Dresden, Germany, July 4, 2006).
2006. (BibTeX)

Schröder-Preikschat, Wolfgang ; Lohmann, Daniel ; Gilani, Wasif ; Scheler, Fabian ; Spinczyk, Olaf:
Static and dynamic weaving in System Software with AspectC++.
In: Coady, Yvonne ; Gray, Jeff ; Klefstad, Raymond (Ed.) : Proceeding of the 39th Hawaii International Conference on System Sciences (HICSS-39)
(Mini-Track on Adaptive and Evolvable Software Systems, Hawaii, January 2006).
Washington : IEEE Press, 2006, pp 214a. (System Sciences Vol. 9) - ISBN 0-7695-2507-5
Keywords: AOP; AspectC++; CiAO; Dynamic Aspect Weaving
[doi>10.1109/HICSS.2006.437] (BibTeX)

Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Synthesising Real-Time Systems from Atomic Basic Blocks.
In: IEEE Technical Committee on Real-Time Systems (Ed.) : Proceedings Work-In-Progress Session
(12th Real-Time and Embedded Technology and Applications Symposium, San Jose, USA, 4-7 April, 2006).
2006, pp 49-52.
Keywords: ABB; RTSC (BibTeX)

Scheler, Fabian ; Schröder-Preikschat, Wolfgang:
Time-Triggered vs. Event-Triggered: A matter of configuration?
In: Dulz, Winfried ; Schröder-Preikschat, Wolfgang (Ed.) : MMB Workshop Proceedings
(GI/ITG Workshop on Non-Functional Properties of Embedded Systems, Nuremberg, 27.03. - 29.03.2006).
Berlin : VDE Verlag, 2006, pp 107-112. - ISBN 978-3-8007-2956-2 (BibTeX)

Teaching

Theses

(automatically exported by UnivIS)

Open Topics

Ongoing Theses

Finished Theses

AUTOSAR I/O GUI - Eclipse-Based Visualization and Test Access to an Automotive Driver Framework (AUTOSAR_GUI)
Student: Wanja Hofer (handed in on 30.01.2007, Thesis file...)
Supervisors: Dr.-Ing. Fabian Scheler, Dr.-Ing. Jürgen Kleinöder, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Felix Fastnacht (3SOFT / Elektrobit Automotive)

Carolo-Cup: Konzeption und Bau eines autonomen Fahrzeugs im Maßstab 1:10 (Carolo_Chassis)
Student: Tobias Gail (handed in on 01.04.2010 )
Supervisors: Dr.-Ing. Fabian Scheler, Dipl.-Ing. Moritz Strübe, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Carolo-Cup: Powertrain - Bereitstellung und Integration einer echtzeitfähigen Betriebsplattform (Carolo_Powertrain_RTOS)
Student: Sebastian Kotulla (handed in on 02.06.2009 )
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler, Dipl.-Inf. Niko Böhm

Carolo-Cup: Powertrain NG (Carolo_Powertrain_NG)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler, Dipl.-Ing. Moritz Strübe

Design and Implementation of a TriCore Backend for the LLVM Compiler Framework (ABB_LLVM_TRICORE)
Student: Christoph Erhardt (handed in on 01.09.2009, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Echtzeit-Bahnsteuerung eines X/Y-Systems mittels eines Kamerasystems
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler, Krug

Efficient Time-Triggered Execution in an Interrupt-Driven Real-Time Operating System (SLOTH_TT)
Student: Danner Daniel (handed in on 2.7.2012, Thesis file...)
Supervisors: Dr.-Ing. Wanja Hofer, Prof. Dr.-Ing. habil. Daniel Lohmann, Dr.-Ing. Fabian Scheler, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Entwurf und Implementierung eines POSIX-Back-End für den RTSC (AORTA_RTSC_ECOS_AUTOSAR)
Student: Tobias Klaus (handed in on 15.02.2013 )
Supervisors: Dr.-Ing. Fabian Scheler, Dipl.-Ing. Florian Franzmann, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Entwurf und Implementierung eines ttCAN-Treibers für OSEKtime/TriCore TC1796 (ABB_TTCAN)
Student: Stefan Rehm (handed in on 28.09.2007, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Entwurf und Implementierung eines zeitgesteuerten Schedulers für eCos (ABB_ECOS_TT_TC1796)
Student: Michael Lang (handed in on 26.06.2008, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Entwurf, Implementierung und Evaluation von Strategien für die gemeinsame Nutzung des Stapelspeichers in ereignisgesteuerten Echtzeitbetriebssystemen am Beispiel von AUTOSAR OS (EZS_STACK_SHARING)
Student: Thomas Klöber (handed in on 07.02.2009 )
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler, Dipl.-Inf. Thomas Seydel

Geschwindigkeitsregelung und Orientierungssteuerung in einem autonomen Modellfahrzeug (Carolo_Controller)
Student: Jonathan Gutknecht (handed in on 31.03.2009, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Prof. Dr.-Ing. Thomas Moor, Dr.-Ing. Fabian Scheler

Hardwareunterstützte, zeittransparente Behandlung von Unterbrechungen in einem Echtzeitbetriebssystem auf dem TriCore TC1796 (CIAO_IRQ_PCP)
Student: Rudi Pfister (handed in on 14.05.2008, Thesis file...)
Supervisors: Dr.-Ing. Fabian Scheler, Prof. Dr.-Ing. habil. Daniel Lohmann, Dr.-Ing. Wanja Hofer, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Konzeption und Portierung einer eingebetteten Antriebsregelung für eine Asynchronmaschine auf ein Echtzeitbetriebssystem
Student: Richard Mäckl (handed in on 08.01.2009 )
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Prof. Dr.-Ing. Bernhard Piepenbreier, Dr.-Ing. Jürgen Kleinöder, Dr.-Ing. Fabian Scheler, Dipl.-Ing. Carsten Wießmeier, Dipl.-Ing. Michael Althammer

Portierung von eCos auf den TriCore TC1796 Mikrocontroller (ABB_ECOS_TC1796)
Student: Thomas Klöber (handed in on 27.5.2008, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Portierung von Redboot/ecos auf den Tricore TC1796 Mikrocontroller (REDBOOT_TC1796)
Student: Rudi Pfister (handed in on 04.12.2006, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Slothful Linux: An Efficient Hybrid Real-Time System by Hardware-Based Task Dispatching (SLOTH_LINUX)
Student: Müller Rainer (handed in on 02.07.2012, Thesis file...)
Supervisors: Dr.-Ing. Wanja Hofer, Prof. Dr.-Ing. habil. Daniel Lohmann, Dr.-Ing. Fabian Scheler, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Statische Ablaufplanung von Abhängigkeitsgraphen ereignisgesteuerter Echtzeitsysteme (ABB_HAPPENSBEFORE_SCHED)
Student: Julian Exner (handed in on 31.03.2009 )
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

Statische WCET Analyse von LLVM Bytecode (ABB_LLVM_WCET_ANALYSIS)
Student: Benjamin Oechslein (handed in on 01.08.2008, Thesis file...)
Supervisors: Prof. Dr.-Ing. Wolfgang Schröder-Preikschat, Dr.-Ing. Fabian Scheler

The Perfect RTOS API (AORTA_PERFECT_RTOS)
Supervisors: Dr.-Ing. Fabian Scheler, Dipl.-Ing. Florian Franzmann, Dipl.-Ing. Tobias Klaus, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

Tool-based Selective Replication of Critical System-Components for SW-based Redundancy in Dependable Embedded Real-Time Systems (CoRed_RTSC_SWR)
Supervisors: Dr.-Ing. Fabian Scheler, Dr.-Ing. Peter Ulbrich, Prof. Dr.-Ing. Wolfgang Schröder-Preikschat

WCET-gewahre Optimierung im RTSC (AORTA_RTSC_WCET_COMPILER)
Supervisors: Dr.-Ing. Fabian Scheler

Own PhD, Diploma Thesis and Study Thesis

Scheler, Fabian:
Atomic Basic Blocks: Eine Abstraktion für die gezielte Manipulation der Echtzeitsystemarchitektur.
Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Ph.D. thesis, 2011.
- 171 pages.
Keywords: Echtzeitsystemarchitektur; Atomic Basic Blocks; ABB; Real-Time Systems Compiler; RTSC; zeitgesteuerte Systeme; ereignisgesteuerte Systeme; Real-Time Systems Architecture; Atomic Basic Blocks; Real-Time Systems Compiler; Time-triggered; Event-triggered (BibTeX)



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